I know, not another one! But this Episode kind of made the Question valuable again.
What happened to him and where is he?
I mean all through the Episode I was waiting for them to find the Frozen Franklin, but no luck there. Still there is the possibility that there might be another room with Stasis Pods or a particular Area for People that uploaded themselfs onto the Destiny. I just think that those Pods kind of change the Image. There could be Ancients on Destiny, just that they are in Stasis and werent found yet.
Those Pods and the AI in Destiny would actually give a pretty satisfying end to the Story for me. Destinys Crew goes on to Freeze or Upload themselfs and from there go on to complete the Mission. I would prefer this to the Cliffhanger ending that is awaiting us.