1) Why wouldnt they pull the pods out of aurora and worry about restoring the Ancients later. I mean who would create a system to sustain life but make it so you couldnt move it. What if the ship blew up -what the ancients would jump out of the air locks?
2) Why would the Ancients trust a computer thats easy to hack with crucial info
3) Why would they use the slower ship to transport said data.
4) How could the captain not even know what hes carrying, yet trust something so critical to a computer
5) Why would the wraith not destroy the ship years ago, since they obviously knew it was there.
6)why didnt the ancinets know they put themselves in hibernation, its there ship!
7)why dont they send the info via subspace
8)why didnt the deady just tow the aurora in hyperspace back to atlantis
9) if mackay can alter the enviroment why not just make a copy of all the minds in the system and everything in the envrioemtn and study it later
10)why did it still have power when it looked form the outside like space junk ( like the stuff around the earth after TLC)