When we're looking at the original Alteran-Ori feud and the creation of the Ark millions of years ago, you have to put the whole idea of ascension out of your mind. That happened far, far later, independently for both groups.
When the Ark was created they were both offshoots of the same, human-like species. The Ori became fanatical and persecuted the Alterans. The Ark was originally created and programmed to convince them this was wrong.
It's probable that this device would have never worked on the Ori once they ascended. But when they created and started influencing human followers, these mortal beings could be influenced by the Ark. It would seem that the programmed "truth" was not "The Ori are false gods," but more generic, like "It is wrong to persecute others to enforce your religious beliefs."
That sort of message would have been appropriate for the pre-ascension Ori millions of years ago, and would work on their followers today (without completing obliterating Origin as a peaceful religion).
When the Ark was created they were both offshoots of the same, human-like species. The Ori became fanatical and persecuted the Alterans. The Ark was originally created and programmed to convince them this was wrong.
It's probable that this device would have never worked on the Ori once they ascended. But when they created and started influencing human followers, these mortal beings could be influenced by the Ark. It would seem that the programmed "truth" was not "The Ori are false gods," but more generic, like "It is wrong to persecute others to enforce your religious beliefs."
That sort of message would have been appropriate for the pre-ascension Ori millions of years ago, and would work on their followers today (without completing obliterating Origin as a peaceful religion).
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